PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04003g05003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 360aa    MW: 39889.6 Da    PI: 5.7656
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04003g05003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.52.1e-121091481155
                               HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  Niben101Scf04003g05003.1 109 RRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 148
                               8******************7.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.75198147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-15105153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.04E-13106152No hitNo description
SuperFamilySSF474592.22E-15109173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.7E-10109148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-15109158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MANNNIYHHN ASSSFSLTEP DPEPDDISVF LRHILHPSSN FMTHEMQYSS LLPHLLPKNQ  60
HGELSSSGGG IFSPSYGAYN VPASVANVSS SSVGTMDNDA DDYECESERR RSRINEKMKA  120
LQNLIPNSNK TDKASMLDEA IEYLKQLQLQ VQVLTMRNGL SMYPLGLPRD QVSQLRMLSE  180
ENGYTNAKAA GALHVNQDTW LNPIFSPSEN RTETKLTPVV TMSNVNHSNN AFESDSSINV  240
NLDPFQLSRS TTKEILREDW LPLHEMNERP SKTVSIGENL ASSVPFGASD LKRNTLEACL  300
LPYQFGALGE TNMDCDQLLA PRLYRNPSSI ISHGGRTLSK PNAVTSEILV ASSCWTLSKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009607890.10.0PREDICTED: transcription factor SPATULA isoform X1
RefseqXP_016487135.10.0PREDICTED: transcription factor SPATULA-like
TrEMBLK4BDC41e-144K4BDC4_SOLLC; Uncharacterized protein
STRINGSolyc02g093280.2.11e-144(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA98502227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.11e-21bHLH family protein